EnvGen_Medium
Dnr:
NAISS 2026/3-367
Type:
NAISS Medium
Principal Investigator:
Anders Andersson
Affiliation:
Kungliga Tekniska högskolan
Start Date:
2026-06-03
End Date:
2027-07-01
Primary Classification:
10606: Microbiology (Medical aspects at 30109 and agricultural at 40302)
Secondary Classification:
10203: Bioinformatics (Computational Biology) (Applications at 10610)
Webpage:
Allocation
- Klemming at PDC: 40000 GiB
- Dardel-GPU at PDC: 300 GPU-h/month
- Dardel at PDC: 120 x 1000 core-h/month
Abstract
(Meta)genomics and transcriptomics analysis of NGS data
generated by NGI. High-throughput imaging data
generated by Imaging Flow Cytobot (IFCB). Microbial
communities from a range of environments are being
analysed to study the function and evolution of microbial
consortia, and for developing and optimising
bioinformatics methods.
Example of output from our previous SNIC/NAISS
projects: https://www.ncbi.nlm.nih.gov/pubmed/30322929
https://www.ncbi.nlm.nih.gov/pubmed/30266101
https://www.ncbi.nlm.nih.gov/pubmed/30093614
https://www.ncbi.nlm.nih.gov/pubmed/30063227