NAISS
SUPR
NAISS Projects
SUPR
Glucose-dependent epigenetic regulation in THP-1 cells
Dnr:

NAISS 2025/22-1767

Type:

NAISS Small Compute

Principal Investigator:

Cheng-Tsung Pan

Affiliation:

Karolinska Institutet

Start Date:

2025-12-19

End Date:

2027-01-01

Primary Classification:

10610: Bioinformatics and Computational Biology (Methods development to be 10203)

Webpage:

Allocation

Abstract

Acute myeloid leukemia (AML) exhibits extensive metabolic reprogramming, by which the cancer cells utilize glucose for their leukemic proliferation and survival. Monocytic leukemia THP-1 cell line is used as the a standard model for investigating these glucose-dependent metabolic and epigenetic landscapes. These regulation landscapes is essential for translating metabolic insights into clinical AML pathogenesis. I aim to recruit in-house NGS cell line data with large public NGS datasets and to integrate multiple NGS data, including but not limited to mRNA-Seq, totalRNA-Seq, smallRNA-Seq and the art-of-state RADICL-Seq, to elucidate the change of epigenetic regulation associated with glucose change in AML cells.