SUPR
Pilot CRC RNA-seq project
Dnr:

NAISS 2025/22-764

Type:

NAISS Small Compute

Principal Investigator:

Sanja Vickovic

Affiliation:

Uppsala universitet

Start Date:

2025-05-19

End Date:

2026-06-01

Primary Classification:

30401: Medical Biotechnology (Focus on Cell Biology (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)

Webpage:

Allocation

Abstract

We want to map bulk RNA-seq data using Star and search for correlations with metadata to understand batch effects. Then, we want to overlay this data on publicly available RNA-seq data using scanpy.