SUPR
Resistance mutations in aquatic plastisphere microbiomes
Dnr:

NAISS 2025/6-76

Type:

NAISS Medium Storage

Principal Investigator:

Johan Bengtsson-Palme

Affiliation:

Chalmers tekniska högskola

Start Date:

2025-02-28

End Date:

2025-09-01

Primary Classification:

10610: Bioinformatics and Computational Biology (Methods development to be 10203)

Allocation

Abstract

Large-scale high-throughput data is the basis of modern bioinformatics. This data comes in many forms, including, but not limited to: genome sequencing, transcriptomics, proteomics, and metagenomics. The analysis of these types of data requires the use of advanced statistical and computational methods, as well as large-scale data mining, and thus demands a significant amount of computational power. This storage project is requested in association with the C3SE 2025/1-11 “High-throughput microbiology” compute project. It will be used to temporarily store raw and processed metagenomic data while these analyses are conducted on Vera. Specifically, the metagenomic samples originate from over a hundred sampling locations worldwide, and will be datamined for bacterial genes with functional characterizations related to point-mutation-induced antibiotic resistance.