Spatial whole genome sequencing on CRC

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Dnr:

sens2025004

Type:

NAISS SENS

Principal Investigator:

Sanja Vickovic

Affiliation:

Uppsala universitet

Start Date:

2025-02-15

End Date:

2026-03-01

Primary Classification:

30203: Cancer and Oncology

Webpage:

https://www.scilifelab.se/researchers/sanja-vickovic/

Allocation

Cygnus /proj/nobackup at UPPMAX: 80000 GiB
Cygnus /proj at UPPMAX: 25000 GiB
Bianca at UPPMAX: 10 x 1000 core-h/month

Abstract

Whole genome (60x) and transcriptome (30 M reads) sequencing of tumor and normal samples from 1.000+ patients with colorectal cancer included in U-CAN. Whole genome (15-20X) and transcriptome (500 M reads) for a subset of ~100 samples from the cohort above.