SUPR
Comparative genomics short project in butterflies PDC
Dnr:

NAISS 2024/22-1659

Type:

NAISS Small Compute

Principal Investigator:

Christopher Wheat

Affiliation:

Stockholms universitet

Start Date:

2024-12-26

End Date:

2025-07-01

Primary Classification:

10615: Evolutionary Biology

Webpage:

Allocation

Abstract

We have a set of about 5000 genes, each an alignment of about 90 species coding region. For each gene, we need to 1) make a phylogenetic tree (using iQtree, which is quick) 2) estimate rates of molecular evolution (hyphy, which can take from 1 to 8 hours per gene) We have been running this locally, have all the working scripts. We now need to scale out in a massively parallel framework for a quick turn around time. We expect with modest allocations, to be finished in < 1 week.