SUPR
Testrunning Computational Pipelines
Dnr:

NAISS 2024/22-1507

Type:

NAISS Small Compute

Principal Investigator:

Stefan Enroth

Affiliation:

Uppsala universitet

Start Date:

2024-11-15

End Date:

2025-12-01

Primary Classification:

10610: Bioinformatics and Systems Biology (methods development to be 10203)

Webpage:

Allocation

Abstract

We are analysing vaginal microbiota in patient samples based on long and short-read seqeuncing. The data is considered sensitive and stored under project sens2021578. However some of the pipelines we would like to use require internet connections and we therefore evaluate/test first on rackham. After the test-run we make containers and move to binaca. Some of these pipelines requires multiple cores which is why we also need a project on rackham.