SUPR
DNA network test 2024DS Graphic analysis
Dnr:

NAISS 2024/22-1408

Type:

NAISS Small Compute

Principal Investigator:

Shuai Lang

Affiliation:

Kungliga Tekniska högskolan

Start Date:

2024-10-28

End Date:

2025-11-01

Primary Classification:

10203: Bioinformatics (Computational Biology) (applications to be 10610)

Webpage:

Allocation

Abstract

In this project, we aim to perform graphical analysis of a DNA network, formed through chemical and biochemical reactions of DNA. The analysis relies on cuGraph, a CUDA-based graph analysis library that requires Nvidia GPUs for efficient processing. Initially, I applied for access to the PDC Dardel-GPU, but I recently discovered that its GPUs are AMD, which are not compatible with cuGraph. Therefore, to carry out the graphical analysis, I will need to use Tetralith, which provides the necessary Nvidia GPU resources.