SUPR
RoboGut microbiota analysis
Dnr:

NAISS 2024/22-1350

Type:

NAISS Small Compute

Principal Investigator:

Shuowen Cao

Affiliation:

Sveriges lantbruksuniversitet

Start Date:

2024-10-14

End Date:

2025-11-01

Primary Classification:

10606: Microbiology (medical to be 30109 and agricultural to be 40302)

Webpage:

Allocation

Abstract

This project aims to identify the main members of the microbiota sampled from our artificial fish gut system with various probiotic treatments at different time points and investigate the interactions between the probiotics, gut microbiota, and metabolomics over time. All raw 16S sequencing data will be processed and analyzed by QIIME2 software and R packages on UPPMAX HPC. After combining the sequencing and metabolomics results, statistical tests and models will be done using R packages to understand the relations.