Splicing analysis in Arabidopsis thaliana

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Dnr:

NAISS 2024/23-466

Type:

NAISS Small Storage

Principal Investigator:

Sarah Muniz Nardeli

Affiliation:

Umeå universitet

Start Date:

2024-09-01

End Date:

2025-09-01

Primary Classification:

10610: Bioinformatics and Systems Biology (methods development to be 10203)

Webpage:

https://www.upsc.se/researchers/5841-schmid-markus-regulation-of-plant-growth-development-by-the-environment.html

Allocation

Klemming at PDC: 10000 GiB
Crex 1 at UPPMAX: 10000 GiB

Abstract

This storage project at Uppmax will be used to store the data analysis on the project NAISS 2023/22-795. The project will focus on the analysis of transcriptomic data. We intend to work with the nextflow and nf-core resources, such as https://nf-co.re/rnaseq/; https://nf-co.re/rnasplice; https://nf-co.re/nanoseq/; and https://nf-co.re/nascent/.