SUPR
Multi-modal generative spatial biology
Dnr:

NAISS 2024/22-1037

Type:

NAISS Small Compute

Principal Investigator:

Ludvig Bergenstråhle

Affiliation:

Karolinska Institutet

Start Date:

2024-08-08

End Date:

2025-09-01

Primary Classification:

10203: Bioinformatics (Computational Biology) (applications to be 10610)

Webpage:

Allocation

Abstract

Spatial biology technologies provide complementary information about tissue anatomy but are often challenging or costly to combine experimentally. The aim of this project is to create a multi-modal generative model of spatial biology data that integrates diverse data types and can be used for cross-modality data transfer. Application areas include synthetic data generation, histology-guided gene expression imputation and super resolution in sequencing-based spatial transcriptomics, and feature imputation in high-resolution in situ data.