freshwater_metagenomes

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Dnr:

NAISS 2024/22-910

Type:

NAISS Small Compute

Principal Investigator:

Rhiannon Mondav

Affiliation:

Lunds universitet

Start Date:

2024-07-01

End Date:

2025-07-01

Primary Classification:

10606: Microbiology (medical to be 30109 and agricultural to be 40302)

Webpage:

https://portal.research.lu.se/en/persons/rhiannon-mondav

Allocation

Klemming at PDC: 500 GiB
Dardel at PDC: 10 x 1000 core-h/month
Rackham at UPPMAX: 2 x 1000 core-h/month

Abstract

I have collated and cleaned (and compressed) 820 metagenomes and their metadata from public databases and publications. I have classified them taxonomically and functionally annotated them. I also collected several useful databases and software.