Red clover RNA-seq and Magnaporthe genome analysis
Dnr:
NAISS 2024/23-290
Type:
NAISS Small Storage
Principal Investigator:
Shridhar Jambagi
Affiliation:
Sveriges lantbruksuniversitet
Start Date:
2024-05-31
End Date:
2025-05-01
Primary Classification:
10203: Bioinformatics (Computational Biology) (applications to be 10610)
Webpage:
Allocation
Abstract
The project involves 2 parts. First, identification of candidate genes in red clover, Sclerotinia spp and Fusarium spp species. Analysis includes differential expression of genes, heat maps, annotation, gene ontology and kegg pathway analysis. Second part of project includes identification of effector candidate genes in two Magnaporthe oryzae strains. nextflow rnaseq pipeline (nfcore/rnaseq) will be applied for DGE analysis followed by downstream analysis in R platform using deseq2 and GO, KEGG pipelines.