Red clover RNA-seq and Magnaporthe genome analysis
Dnr:
NAISS 2024/22-608
Type:
NAISS Small Compute
Principal Investigator:
Shridhar Jambagi
Affiliation:
Sveriges lantbruksuniversitet
Start Date:
2024-04-26
End Date:
2025-05-01
Primary Classification:
10203: Bioinformatics (Computational Biology) (applications to be 10610)
Webpage:
Allocation
Abstract
The project involves 2 parts. First, identification of candidate genes in three species: red clover, Sclerotinia spp and Fusarium spp species. Analysis includes separate rnaseq analysis with nfcore/rnaseq pipeline followed by differential expression of genes, heat maps, annotation, gene ontology and kegg pathway analysis. Second part of project includes identification of effector candidate genes in two Magnaporthe oryzae strains.