EnvGen_compute
Dnr:
NAISS 2024/5-183
Type:
NAISS Medium Compute
Principal Investigator:
Anders Andersson
Affiliation:
Kungliga Tekniska högskolan
Start Date:
2024-04-10
End Date:
2025-05-01
Primary Classification:
10606: Microbiology (medical to be 30109 and agricultural to be 40302)
Webpage:
Allocation
- Dardel-GPU at PDC: 200 GPU-h/month
- Dardel at PDC: 150 x 1000 core-h/month
- Rackham at UPPMAX: 150 x 1000 core-h/month
Abstract
Metagenomics and transcriptomics analysis of NGS data generated at NGI. Microbial communities from a range of environments are being analysed to study the function and evolution of microbial consortia, and for developing and optimising bioinformatics methods.
Example of output from our previous SNIC projects:
https://www.ncbi.nlm.nih.gov/pubmed/30322929
https://www.ncbi.nlm.nih.gov/pubmed/30266101
https://www.ncbi.nlm.nih.gov/pubmed/30093614
https://www.ncbi.nlm.nih.gov/pubmed/30063227