rosling_compute
Dnr:
NAISS 2024/5-117
Type:
NAISS Medium Compute
Principal Investigator:
Anna Rosling
Affiliation:
Uppsala universitet
Start Date:
2024-03-28
End Date:
2025-04-01
Primary Classification:
10615: Evolutionary Biology
Secondary Classification:
10699: Other Biological Topics
Tertiary Classification:
10606: Microbiology (medical to be 30109 and agricultural to be 40302)
Allocation
- Klemming at PDC: 500 GiB
- Crex 1 at UPPMAX: 128 GiB
- Rackham at UPPMAX: 25 x 1000 core-h/month
- Dardel at PDC: 25 x 1000 core-h/month
- Snowy at UPPMAX: 8 x 1000 core-h/month
Abstract
This is a project funded by ERC that aims at elucidating the genomic organisation of Arbuscular Mychorrhizal Fungi. We are sorting individual nuclei using the FACS machine in SciLifeLab. The nuclei are amplified using MDA whole genome amplification and sequenced in batches of 24 using Illumina HiSeqX. We have data from this procedure for multiple species.
The genomes will be assembled and posterior phylogenomic analysis are expected using concatenated orthologs between species as well as other analysis of genetic diversity and repeat content