Reproducing pedigree imputation
Dnr:
NAISS 2024/22-413
Type:
NAISS Small Compute
Principal Investigator:
Carl Nettelblad
Affiliation:
Uppsala universitet
Start Date:
2024-04-01
End Date:
2025-04-01
Primary Classification:
10203: Bioinformatics (Computational Biology) (applications to be 10610)
Webpage:
Allocation
- Klemming at PDC: 500 GiB
- Crex 1 at UPPMAX: 128 GiB
- Dardel at PDC: 5 x 1000 core-h/month
- Rackham at UPPMAX: 5 x 1000 core-h/month
- Snowy at UPPMAX: 1 x 1000 core-h/month
Abstract
In https://genome.cshlp.org/content/29/1/125.full the authors contended that our code base did not produce reasonable results. We want to reproduce their results using the published data.
A new release of related software is now (Janauary 2021) available, which once again makes this effort relevant.
We're also exploring imputation in a wider context, including polyploid species.