SUPR
A use case for federated analysis using a Virtual Platform (VP) developed by the European Joint Project on Rare Diseases (EJP-RD)
Dnr:

NAISS 2024/22-354

Type:

NAISS Small Compute

Principal Investigator:

Erik Hedman

Affiliation:

Uppsala universitet

Start Date:

2024-03-22

End Date:

2025-04-01

Primary Classification:

10203: Bioinformatics (Computational Biology) (applications to be 10610)

Webpage:

Allocation

Abstract

This project explores scenarios for federated analysis of genomic variations in patients to assist in profiling them for treatment and to support research in rare diseases. A use case will be used to identify requirements on interfaces between a virtual platform and the connected resources, on the data objects that are communicated, and the services that process the data. Some focus will be on leveraging solutions offered by B1MG/GDI compatible resources that enable secure and federated queries for genomic/phenotypic information. The compute resources will be used to process synthetic data to produce relevant examples and test data for the virtual platform implementation.