Pilot CRC RNA-seq
Dnr:
NAISS 2024/23-9
Type:
NAISS Small Storage
Principal Investigator:
Sanja Vickovic
Affiliation:
Uppsala universitet
Start Date:
2024-02-01
End Date:
2025-02-01
Primary Classification:
30401: Medical Biotechnology (focus on Cell Biology (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Webpage:
Allocation
Abstract
We will be downloading publiclly available scRNA and spatial RNA seq data, including a lot of cell imaging data, remapping it with to a custom genomics reference and post-processing using CellProfiler and DepMap pipelines.