Brodin lab metagenomic analyses
Dnr:
NAISS 2023/5-562
Type:
NAISS Medium Compute
Principal Investigator:
Petter Brodin
Affiliation:
Karolinska Institutet
Start Date:
2024-01-26
End Date:
2025-02-01
Primary Classification:
10610: Bioinformatics and Systems Biology (methods development to be 10203)
Secondary Classification:
10203: Bioinformatics (Computational Biology) (applications to be 10610)
Webpage:
Allocation
Abstract
Brodinlab aims to elucidate the contribution of the neo and perinatal gastrointestinal microbiome on immune development and immune function to better understand human physiology and pathophysiology.
UPPMAX will be used for bioinformatics analyses of shotgun metagenomic sequencing data which involves: data pre-processing, taxonomic profiling, functional profiling, assembly, binning, statistical analyses etc.