SUPR
Sheep data processing
Dnr:

NAISS 2023/23-649

Type:

NAISS Small Storage

Principal Investigator:

Torsten Günther

Affiliation:

Uppsala universitet

Start Date:

2023-12-22

End Date:

2025-01-01

Primary Classification:

10615: Evolutionary Biology

Allocation

Abstract

We are working on the demographic history of sheep combining modern and ancient genome data. The projects are concerned with the impact of human actions, selection and neutral forces in different parts of the world. For a number of projects, we are using sequence data obtained from publicly available sources and collaborators. These different datasets were often produced and processed with different pipelines, reference genome assemblies etc. To ensure consistency, we need to re-process all of this data with our own pipeline. Raw data will be downloaded and then processed in the project which will generate a number of intermediate files that can be deleted later on. To ensure that all team members have access to the data and to avoid multiple copies of the same files, we need one storage project where all data can be processed together.