SUPR
scRNA-seq analysis of tumor and normal tissues
Dnr:

NAISS 2023/22-1291

Type:

NAISS Small Compute

Principal Investigator:

Viktor Ljungström

Affiliation:

Uppsala universitet

Start Date:

2023-12-08

End Date:

2025-01-01

Primary Classification:

30203: Cancer and Oncology

Webpage:

Allocation

Abstract

This project aims to analyze publicly available single cell RNA sequencing datasets from normal and cancerous samples from several human tissues (including lung, pancreas, and large intestine). We plan to identify cell type specific marker genes expressed in histological and molecular subtypes of tumors and correlate their expression to the corresponding normal tissue with the aim of deciphering the transcriptional landscape that constitutes permissive states for certain molecular aberrations.