Structural variation and local adaptation in Norway spruce
Dnr:
NAISS 2023/5-501
Type:
NAISS Medium Compute
Principal Investigator:
Pascal Milesi
Affiliation:
Uppsala universitet
Start Date:
2023-12-01
End Date:
2024-12-01
Primary Classification:
10615: Evolutionary Biology
Webpage:
Allocation
- Rackham at UPPMAX: 30 x 1000 core-h/month
- Dardel at PDC: 30 x 1000 core-h/month
- Snowy at UPPMAX: 10 x 1000 core-h/month
Abstract
This project aims at investigating the role of genomic structural rearrangements in local adaptation in Norway spruce. Exomes of about 1500 trees have been sequenced. Using approaches recently developed based on allele ratio and depth of coverage, the pattern of gene CNV in norway spruce genomes would be characterised and analyzed regarding trees environment.