Annotating pig genomes
Dnr:
NAISS 2023/22-1127
Type:
NAISS Small Compute
Principal Investigator:
Anita Öst
Affiliation:
Linköpings universitet
Start Date:
2023-11-01
End Date:
2024-11-01
Primary Classification:
10203: Bioinformatics (Computational Biology) (applications to be 10610)
Webpage:
Allocation
- Klemming at PDC: 500 GiB
- Crex 1 at UPPMAX: 128 GiB
- Rackham at UPPMAX: 2 x 1000 core-h/month
- Dardel at PDC: 2 x 1000 core-h/month
Abstract
We are analysing smallRNA-seq data in sperm from four different pig breeds. There are shotgun sequencing data for all these breeds but there are so far no repeat masker annotation on them. To be able to run repeat modeler on these dataset we need computational power.