SUPR
Epigenetic Regulation of Hematopoietic Stem Cell Lineage bias
Dnr:

NAISS 2023/23-508

Type:

NAISS Small Storage

Principal Investigator:

Sidinh Luc

Affiliation:

Karolinska Institutet

Start Date:

2023-11-01

End Date:

2024-11-01

Primary Classification:

30401: Medical Biotechnology (focus on Cell Biology (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)

Webpage:

Allocation

Abstract

In hematopoiesis rare stem cells (HSC) form all the cellular parts of the blood. The HSC compartment is functionally heterogeneous, consisting of biased HSCs with different preferences to generate mature blood cells. The mechanisms underying HSC lineage bias is not well studied. Our hypothesis is that there are gene expression and epigenetic differences in different lineage-biased HSCs. Therefore, we have isolated lineage-biased HSCs to investigate the transcriptome by RNA-seq, chromatin accessibility by ATAC-seq and the histone code by ChIP-seq. Bioinformatics will be done in house with our collaborator and co-investigator Dr. Robert MÃ¥nsson's group at Karolinska Institutet.