SUPR
Splicing and co-transcriptional regulation of plant gene expression under temperature fluctuations
Dnr:

NAISS 2023/22-1125

Type:

NAISS Small Compute

Principal Investigator:

Sarah Muniz Nardeli

Affiliation:

UmeƄ universitet

Start Date:

2023-10-30

End Date:

2024-11-01

Primary Classification:

10610: Bioinformatics and Systems Biology (methods development to be 10203)

Allocation

Abstract

Temperature fluctuations trigger intricate molecular adaptations that allow plants to respond to an ever-changing environment. Arabidopsis thaliana mutants whose genes encode core spliceosome proteins are lethal or highly defective. We hypothesise that the splicing capacity of a plant may be affected by temperature and other environmental factors. This premise will be tested by measuring the splicing capabilities in wild-type and in splicing mutant genotypes grown at different temperatures. In order to determine if plants are capable of splicing, we will combine high-throughput strand-specific RNA sequencing and long-read single-molecule RNA sequencing to investigate the effects of temperature on splicing and transcript use. Consequently, this project proposal aims to conduct the data analysis generated by this research.