SUPR
Single-cell Isoform Atlas
Dnr:

NAISS 2023/23-461

Type:

NAISS Small Storage

Principal Investigator:

Lu Pan

Affiliation:

Karolinska Institutet

Start Date:

2023-09-14

End Date:

2024-10-01

Primary Classification:

10203: Bioinformatics (Computational Biology) (applications to be 10610)

Webpage:

Allocation

Abstract

The aim of the project is to set up a first-ever single-cell isoform atlas for human and other organisms such as pig, mouse, etc. data. There is currently no study has been published to cover a full spectrum of single-cell splicing variants across tissues and across organisms. To fill in the gap, we will carry out in-depth assessments of splicing variants across tissues and across organisms, and identify splicing variants that are differentially expressed at isoform level yet homogeneously expressed at gene-level. Besides, we will also identify cell-type-specific, tissue-specific, and organism-specific variants at the single-cell level.