RNA sequencing of surface mucus producing cells captured with Laser Microdissection and Pressure Catapulting in mouse stomachs infected with Helicobacter pylori Sydney Strain 1
Dnr:
NAISS 2023/22-759
Type:
NAISS Small Compute
Principal Investigator:
Mattias Erhardsson
Affiliation:
Göteborgs universitet
Start Date:
2023-07-14
End Date:
2024-08-01
Primary Classification:
10604: Cell Biology
Allocation
Abstract
This RNA sequencing (RNAseq) data comes from mouse strain C57/BL6 gastric surface mucus cells collected with laser microdissection. It was an experimental infection with Helicobacter pylori. The samples were sequenced by NGI. The fastq-files were processed with the nf-core/rnaseq analysis pipeline, which was was run by NGI at UPPMAX.