SUPR
Integrative pQTL discovery and tumor mutation burden analysis in UCAN
Dnr:

sens2022015

Type:

SNIC SENS

Principal Investigator:

Tobias Sjöblom

Affiliation:

Uppsala universitet

Start Date:

2022-09-26

End Date:

2025-10-01

Primary Classification:

30107: Medical Genetics

Allocation

Abstract

The aim of this project is to identify colorectal cancer specific-pQTLs and relate the results to the expressed tumor mutation burden in colorectal cancer patients using the integration of whole-genome sequencing, somatic mutations, RNA-seq and Olink proteome profiling from U-CAN study in Uppsala University. Several computationally intensive analyses will be conducted, including the whole-genome sequencing analysis, RNA-seq analysis, GWAS, colocalization analysis and Mendelian randomization.