SUPR
Multi-omics and multi-sample analysis of endocrine tumors
Dnr:

sens2019036

Type:

SNIC SENS

Principal Investigator:

Joakim Crona

Affiliation:

Uppsala universitet

Start Date:

2020-01-01

End Date:

2025-02-01

Primary Classification:

30203: Cancer and Oncology

Webpage:

Allocation

  • Castor /proj/nobackup at UPPMAX: 25000 GiB
  • Cygnus /proj/nobackup at UPPMAX: 25000 GiB
  • Castor /proj at UPPMAX: 20000 GiB
  • Cygnus /proj at UPPMAX: 20000 GiB
  • Bianca at UPPMAX: 15 x 1000 core-h/month

Abstract

The study will investigate paired normal tissue, primary tumours and metastases from patients with metastatic endocrine cancers with the aim to characterise disease evolution and stability of molecular classifiers over time. The data will include whole genome sequencing of 16 normal samples and 54 tumor samples, as well as RNA-Seq of 51 samples and array based DNA methylation analysis of 63 tumor samples. DNA methylation levels, gene expression patterns, somatic structural variants as well as somatic and germline simple mutations will be integrated.