Pilot CRC RNA-seq project
Dnr:
NAISS 2023/22-78
Type:
NAISS Small Compute
Principal Investigator:
Sanja Vickovic
Affiliation:
Uppsala universitet
Start Date:
2023-02-01
End Date:
2024-02-01
Primary Classification:
30401: Medical Biotechnology (focus on Cell Biology (incl. Stem Cell Biology), Molecular Biology, Microbiology, Biochemistry or Biopharmacy)
Webpage:
Allocation
Abstract
We want to map bulk RNA-seq data using Star and search for correlations with metadata to understand batch effects. Then, we want to overlay this data on publicly available RNA-seq data using scanpy.