Nanopore
Dnr:
sens2019551
Type:
SNIC SENS
Principal Investigator:
Lars Feuk
Affiliation:
Uppsala universitet
Start Date:
2019-07-05
End Date:
2024-10-01
Primary Classification:
30107: Medical Genetics
Allocation
- Castor /proj at UPPMAX: 15000 GiB
- Cygnus /proj at UPPMAX: 15000 GiB
- Castor /proj/nobackup at UPPMAX: 10000 GiB
- Cygnus /proj/nobackup at UPPMAX: 10000 GiB
- Bianca at UPPMAX: 4 x 1000 core-h/month
Abstract
We will start running human samples on Oxford Nanopore PromethION to identify structural variation. Data will be mapped with Minimap2 and Sniffles will be used for variant calling. We will primarily work with base called data, but may in some cases want to keep raw data (large storage requirements).